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Normal - Togekiss

Fighting - Lucario

Water - Milotic

Grass - Breloom

Fire - Chandelure/Volcarona

Electric - Rotom

Poison - Haunter

Ghost - Shedinja

Psychic - Lugia

Bug - Galvantula

Flying - Zapdos

Dragon - Zekrom

Rock - Tyranitar

Ground - Steelix

Ice - Lapras

Steel - Magnezone

Dark - Zoroark

Gen I: 3 Gen II: 3 Gen III: 3 Gen IV: 4 Gen V: 4/5 (if you count both Chandelure and Volcarona)

I couldn't decide between Chandelure and Volcarona, because they be beastly. I almost put Giratina with Zekrom, but Zekrom has the electric factor going for him, which, if you couldn't tell, I like.

Also, my favorites are very spread among gens. Akano does not play favorites with his generations of Pokémon.

(Gen II all the way! )